2010
E. Gombocz:
"The New Information Age in Life Sciences and Clinics: From Static Data Warehouses to Decision Support based on Dynamic Semantically Integrated Data and Knowledge Networks"
Keynote Lecture at BIT's 2nd Annual World Congress BioSoft 2010
World Exposition Center, Dalian, China, June 23-25, 2010
Abstract [.pdf / 270 KB]
Lecture Slides [.pdf / 7.6 MB]
R. Stanley, E. Gombocz, J. Eshleman, C. Rockey:
"From Concepts to Production: Semantic Technology Solves Real Life Sciences and Healthcare Challenges"
Poster at Semantic Technology 2010 (SemTech)
Hilton, San Francisco, CA, June 21-25, 2010
Poster (portrait) [.pdf / 1.1 MB]
E. Gombocz, R. Stanley, J. Eshleman, Z. Rhoades:
"From multiple biomarkers to patient-centric personalized medicine: An 'Applied Semantic Knowledgebase' for decision support"
Poster at CHI's Biomarker World Congress 2010 Loews, Philadelphia, PA, May 4-6, 2010 Poster (portrait) [.pdf / 1 MB]
E. Gombocz, R. Stanley, Z. Rhoades, J. Eshleman:
"Applied Semantic Knowledgebases (ASK ®): Confident decisions in personalized medicine using semantic biology models"
Poster at CHI's Bio-IT World Conference 2010 World Trade Center, Boston, MA, April 20-22, 2010 Poster (portrait) [.pdf / 1 MB]
Z. Rhoades, E. A. Gombocz:
"Charting the Unknown: Capturing and Delivering
Value From Understanding Complex Biological
Responses"
Am. Biotechnology Laboratory 28
(3): (2010).
E. A. Gombocz:
"Predictive models for biology in personalized
medicine: Are we there yet? "
Lecture at Conference on Semantics in
Healthcare and Life Sciences (CSHALS)
Royal Sonesta Hotel Boston, Cambridge, MA, February
24-26, 2010
Lecture slides
[.pdf / 3.9 MB]
R. A. Stanley, E. A. Gombocz, Z. Rhoades:
"Realizing personalized medicine with semantic
technology: Applied Semantic Knowledgebases (ASK ®) at
work"
Poster at Conference on Semantics in
Healthcare and Life Sciences (CSHALS)
Royal Sonesta Hotel Boston, Cambridge, MA, February
24-26, 2010
Poster (portrait)
[.pdf / 1.4 MB]
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2009
E. A. Gombocz:
"Changing decision-making in life sciences
& personalized medicine: Applied Semantic
Knowledgebases (ASK ®) at work!"
Lecture at Planet Connect Life Science
Symposium: Advances Towards Personalized Medicine
Claremont Resort and Spa, Berkeley, CA, November 19,
2009
Abstract
R. A. Stanley, Z. Rhoades, E. A. Gombocz:
"Applied Semantic Knowledgebases (ASK):
Changing how knowledge is built and applied in Life
Sciences and personalized medicine"
Poster at Adapt 2009 Accelerating
Development & Advancing Personalized
Therapy
Grand Hyatt Washington, Washington DC, September 22-25,
2009
Poster (portrait)
[.pdf / 1.1 MB]
R. Stanley:
"NIST / CLDA Case Study: From Data Management, Exploration and Analysis to Applied Combinatorial Biomarkers for Hepatotoxicity"
Lecture at GTC Bio 3rd Annual Biomarker Discovery and Development
San Diego, CA, July 10-11,2009
Lecture slides
[.pdf / 6.5 MB]
E. A. Gombocz, Z. Rhoades:
"Predictive Toxicology: Applied Semantics with
major implications towards safer drugs"
Poster at SemTech 2009 Semantics Technology
Conference
The Fairmont Hotel, San Jose, CA, June 14-18, 2009
Poster (portrait)
[.pdf / 1.3 MB]
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2008
E. A. Gombocz, A. J. Higgins, P. Hurban, E. K.
Lobenhofer, F. T. Crews, R. A. Stanley, C. Rockey, T.
Nishimura:
"Does network analysis of integrated data help
understanding how alcohol affects biological
functions?" - Results of a semantic approach to
biomarker discovery
Poster at CHI's Biomarker Discovery Summit
2008 at Loews Philadelphia Hotel,
Philadelphia, PA, September 29-October 1, 2008
Poster (portrait)
[.pdf / 1.6 MB]
E. A. Gombocz, R.A. Stanley, Toshiro Nishimura,
Chuck Rockey:
"From genes, proteins, metabolites, tissue
analytics and literature towards a coherent
knowledgebase: Semantics at work"
Poster at CHI's Beyond Genome
2008 at Fairmont Hotel, San Francisco,
CA, June 8-12, 2008
Poster (portrait)
[.pdf / 1.0 MB]
M. Wilkinson:
"Focus biomarker qualification: Semantic
applications for translational medicine and their
applicability for industry, clinics and academic
centers of excellence - REPORT FROM THE WORKING
GROUP"
Lecture at CHI's Biomarker World Congress
2008 at Loews Philadelphia Hotel,
Philadelphia, PA, May 19-21, 2008
Lecture
slides [.pdf / 8.2 MB]
E. A. Gombocz, Toshiro Nishimura, Chuck Rockey:
"Towards better understanding of complex
biology: Ontology merging across data sources using
multiple thesauri in semantic networks"
Poster at CHI's Biomarker World Congress
2008 at Loews Philadelphia Hotel,
Philadelphia, PA, May 19-21, 2008
Poster (portrait)
[.pdf / 1.0 MB]
E. A. Gombocz, R. A. Stanley, Toshiro Nishimura,
Alan J. Higgins, Pat Hurban:
"From observations to understanding: A semantic
systems biology approach for biomarker discovery in
translational medicine"
Poster at CHI's Biomarker World Congress
2008 at Loews Philadelphia Hotel,
Philadelphia, PA, May 19-21, 2008
Poster (portrait)
[.pdf / 0.8 MB]
A. J. Higgins, E. A. Gombocz, R. A. Stanley:
"From Correlation to Biological Understanding:
Multi-modal semantic networks for biomarker discovery
and qualification"
Lecture at CHI's Bio-IT World
2008 at World Trade Center,
Boston, MA, April 28-30, 2008
Lecture slides
[.pdf / 8.6 MB]
E. A. Gombocz, R. A. Stanley, C. Rockey, T.
Nishimura:
"Data integration framework for discovery and
validation: Smart merging of experimental and public
data across ontologies and taxonomies"
Poster at CHI's Bio-IT World
2008 at World Trade Center,
Boston, MA, April 28-30, 2008
Poster (portrait)
[.pdf / 0.9 MB]
T. Slater, J. S. Almeida, M. Wilkinson, A. J.
Higgins, E. A. Gombocz,
T. Nishimura:
"Working Group on Semantic Applications in
Translational Research: Industry and academic centers
of excellence join forces to build coherent networks to
comprehend complex biological systems in context of
personalized medicine and rational drug
design"
Poster at CHI's Molecular Medicine
Tri-Conference 2008 at Moscone North
Convention Center,
San Francisco, CA, March 26-27, 2008
Poster (portrait)
[.pdf / 1.1 MB]
E. A. Gombocz, A. J. Higgins, R. A. Stanley:
"Using semantics in biomarker discovery:
Unified cross-OMICS correlation networks help
scientists understanding biological
functions"
Poster at CHI's Molecular Medicine
Tri-Conference 2008 at Moscone North
Convention Center,
San Francisco, CA, March 26-27, 2008
Poster (portrait)
[.pdf / 1.5 MB]
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2007
E. Gombocz, R. Stanley:
"Processing, Annotating, and Searching;
Interacting Efficiently With any Image"
Am. Biotechnology Laboratory 25
(10): (2007). [.pdf / 8.4 MB]
A. Higgins:
"Discovery of Toxicity Biomarkers through
Application of Correlation Networks and Canonical
Pathways"
Lecture at CHI's Biomarker Discovery
Summit: Bridging the Silos in Biomarker Discovery and
Validation at Loews Philadelphia Hotel,
Philadelphia, PA, September 17-19, 2007
Lecture slides
[.pdf / 10.2 MB]
E. Gombocz, A. Higgins:
"Discovery and Validation of Toxicity
Biomarkers through Application of Correlation Networks
and Canonical Pathways"
Lecture at GTCbio's Rediscovering
Biomarkers: Detection, Development, and
Validation at San Diego Marriot La Jolla,
San Diego, CA, July 23-24, 2007
Lecture slides
[.pdf / 4.5 MB]
E.Gombocz, A. Higgins:
"Discovery and Validation of Toxicity
Biomarkers Using Correlation Networks and Canonical
Pathways"
Poster at CHI's 8th Annual Beyond
Genome at Fairmont Hotel,
San Francisco, CA, June 21-22, 2007
Poster (portrait)
[.pdf / 1.2 MB]
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2006
E.Gombocz, R. Stanley, M. Travers:
"From disparate multi-disciplinary data to
coherent knowledge: Informatics for systems
biology-based disease profiling"
Lecture at HUPO 2006 at Long
Beach Conference Center, Long Beach, CA, October 28 -
November 1, 2006
Molecular &
Cellular Proteomics 5 (10): S17 (2006) [Abstract
93]
Lecture slides
[.pdf / 6.0 MB]
R.Stanley, E.Gombocz:
"Translational Informatics for Systems
Biology"
Am. Biotechnol. Laboratory 24 (7): p.24 - 26
(2006).
R.Stanley:
"A Case Study for Integration Informatics: From
Data Integration and Management to Marker-based
Diagnostic Models"
Lecture at CHI's Beyond Genome
2006 at the Fairmont, San Francisco, CA,
June 19-21 , 2006
Lecture slides
[.pdf / 3.2 MB]
E.A. Gombocz, R.A. Stanley, M. Travers:
"Translational Informatics Applied To Systems
Biology: From Data Integration and Process Management
to Diagnostics Models "
Poster at the QB3 Biomedical Engineering
Symposium at the University of
California San Francisco, San Francisco CA, April 26,
2006
Poster (portrait)
[.pdf / 1.0 MB]
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2005
E.A. Gombocz, R.A. Stanley:
"Intelligent data: Towards systems biology for
proteomics in a single system"
Poster at the 4th Annual World Congress of
the Human Proteome Organization [HUPO] at
the International Congress Center in Munich, Germany,
August 28-September 1, 2005
Poster (portrait)
[.pdf / 1.0 MB]
E.A. Gombocz, R.A. Stanley:
"Achieving interoperability in Systems Biology:
New informatics methods for user-centric, lightweight
integration of heterogeneous data" Poster at
the 4th International Symposium on
Challenges in Systems Biology at the
Institute for Systems Biology
in Seattle, WA, April 24-25, 2005
Abstract [.pdf /
1.5 MB]
E.Gombocz, R.Stanley:
"Bringing Life Sciences together: Lightweight,
regulatory-compliant knowledge management across
heterogeneous data sources" Workshop at the
229th ACS National Meeting in
San Diego, CA, March 13 -17, 2005
Abstract [.pdf /
69 kB]
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2004
E.Gombocz:
" Beyond LIMS: Next Level of Scientific
Information Integration and 2DE Analysis"
Presentation and workshop at 21st Annual
AES/AIChE Meeting Nov. 7-12, 2004 in
Austin, TX
Abstract [.pdf /
531 kB] Poster (landscape)
[.pdf / 2.3 MB]
E.A. Gombocz, R.A. Stanley, R.L. Stevenson:
"From Acquisition to Identification Using
Global Data Resources: Fast, Comprehensive Knowledge
Building in 2-D Electrophoresis" Presentation
at Lab Automation 2004
Jan.31-Feb.5, 2004 in San Jose, CA
Abstract [.pdf /
95 kB]
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2003
E.Gombocz, R.Stanley:
"2DE as Part of Integrated Proteomics: A Full
System's Biology Approach" Presentation at
20th Annual AES/AIChE Meeting
Nov.16-21, 2003 in San Francisco, CA
Poster (portrait)
[.pdf / 626 kB]
Poster (landscape)
[.pdf / 674 kB]
Full
paper[.pdf / 3.2 MB]
E.Gombocz:
"From the Early Days of Automated
Electrophoresis with in-Gel Assaying and Elution to New
Avenues in Integrated Multidimensional Bioinformatics
and Computational Biology using Intelligent
Data" International NIH
Workshop 'Electrophoretic Separations in
Biology and Medicine: past and Future. Honoring Andreas
Chrambach for 40 Years Achievements in Science',
National Institutes of Health, Bethesda, MD, June 5,
2003 (2003).
R.A. Stanley, W.S. Hancock:
"Bioinformatics in the Clinic - Challenges And
Opportunities For Improved Trials And Clinical
Care"
Am. Biology Laboratory 3 (3): p
29-36 (2003).
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2002
W.S. Hancock, Shiaw L. Wu, R.A. Stanley, E.A.
Gombocz:
"Publishing Large Proteome Dataset: Scientific
Policy Meets Emerging Technologies"
Trends in Biotechnology 20 (12)
(Suppl.) S34-S44 (2002).
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